Package: ROptimus 3.0.0
Aleksandr B. Sahakyan
ROptimus: A Parallel General-Purpose Adaptive Optimisation Engine
A general-purpose optimisation engine that supports i) Monte Carlo optimisation with Metropolis criterion [Metropolis et al. (1953) <doi:10.1063/1.1699114>, Hastings (1970) <doi:10.1093/biomet/57.1.97>] and Acceptance Ratio Simulated Annealing [Kirkpatrick et al. (1983) <doi:10.1126/science.220.4598.671>, Černý (1985) <doi:10.1007/BF00940812>] on multiple cores, and ii) Acceptance Ratio Replica Exchange Monte Carlo Optimisation. In each case, the system pseudo-temperature is dynamically adjusted such that the observed acceptance ratio is kept near to the desired (fixed or changing) acceptance ratio.
Authors:
ROptimus_3.0.0.tar.gz
ROptimus_3.0.0.zip(r-4.5)ROptimus_3.0.0.zip(r-4.4)ROptimus_3.0.0.zip(r-4.3)
ROptimus_3.0.0.tgz(r-4.4-any)ROptimus_3.0.0.tgz(r-4.3-any)
ROptimus_3.0.0.tar.gz(r-4.5-noble)ROptimus_3.0.0.tar.gz(r-4.4-noble)
ROptimus_3.0.0.tgz(r-4.4-emscripten)ROptimus_3.0.0.tgz(r-4.3-emscripten)
ROptimus.pdf |ROptimus.html✨
ROptimus/json (API)
| # Install 'ROptimus' in R: |
| install.packages('ROptimus', repos = c('https://sahakyanlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sahakyanlab/roptimus/issues
Last updated 2 years agofrom:d1f24ef661. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 01 2024 |
| R-4.5-win | WARNING | Nov 01 2024 |
| R-4.5-linux | WARNING | Nov 01 2024 |
| R-4.4-win | WARNING | Nov 01 2024 |
| R-4.4-mac | WARNING | Nov 01 2024 |
| R-4.3-win | WARNING | Nov 01 2024 |
| R-4.3-mac | WARNING | Nov 01 2024 |
Exports:OptimusOptimusExamples
Dependencies:codetoolsdoParallelforeachiterators
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Tutorial 5 m() function | ex.m.fun |
| Tutorial 5 r() function | ex.r.fun |
| Tutorial 5 u() function | ex.u.fun |
| Tutorial 5 Genomic Contact Data | IJ_ORIG |
| Acceptance Ratio Simulated Annealing and Acceptance Ratio Replica Exchange Monte Carlo Optimisation Engine | Optimus |
| Generate script for reproducing a tutorial | OptimusExamples |